PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G08490.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-X1
Protein Properties Length: 1048aa    MW: 112390 Da    PI: 8.1956
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G08490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.74.5e-07318335118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG+H Cq +CH+GpC++C
  LPERR06G08490.1 318 CGNHACQDICHPGPCGEC 335
                      ****************** PP

2zf-NF-X122.82e-07376393118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG H+C+ +CHeG+CppC
  LPERR06G08490.1 376 CGVHRCKVTCHEGDCPPC 393
                      ****************** PP

3zf-NF-X116.51.9e-05471489119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG+H Cq lCH G CppC 
  LPERR06G08490.1 471 CGQHGCQLLCHSGHCPPCL 489
                      ******************6 PP

4zf-NF-X118.44.7e-06581597117
         zf-NF-X1   1 CGkHkCqklCHeGpCpp 17 
                      CG+H C ++CH+ pC+p
  LPERR06G08490.1 581 CGIHACTRTCHPSPCDP 597
                      ***************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578505.65E-6129198No hitNo description
PROSITE profilePS500169.009136195IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590139192IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.391139193IPR001841Zinc finger, RING-type
CDDcd060082.52E-4226289No hitNo description
SMARTSM004380.023251269IPR000967Zinc finger, NF-X1-type
PfamPF014227.8253268IPR000967Zinc finger, NF-X1-type
CDDcd060084.69E-8310350No hitNo description
SMARTSM004382.3E-4318337IPR000967Zinc finger, NF-X1-type
PfamPF014221.2E-4318335IPR000967Zinc finger, NF-X1-type
CDDcd060081.15E-13366414No hitNo description
SMARTSM004380.001376395IPR000967Zinc finger, NF-X1-type
PfamPF014225.2E-6376393IPR000967Zinc finger, NF-X1-type
CDDcd060081.29E-8461513No hitNo description
SMARTSM004387.2E-4471490IPR000967Zinc finger, NF-X1-type
PfamPF014220.0016471488IPR000967Zinc finger, NF-X1-type
SMARTSM004380.49528546IPR000967Zinc finger, NF-X1-type
PfamPF01422130528544IPR000967Zinc finger, NF-X1-type
SMARTSM004380.007581616IPR000967Zinc finger, NF-X1-type
PfamPF014220.0016581597IPR000967Zinc finger, NF-X1-type
PfamPF0142210618644IPR000967Zinc finger, NF-X1-type
SMARTSM004380.16625646IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1048 aa     Download sequence    Send to blast
MQSSSDRRRG GGGNGGGGGP VAVPSSRTVW RPPATAPILP FPNPASEDRP PQRRPRHRNR  60
GNSGGQRRAP PPQERPSPAP PPPRQQQERP SAAAPSPAPT RSARGRVAAA VAGAGMSDGS  120
VPQLVQEIQD KLARGAVECM ICYDMVRRSA PVWSCGSCFS IFHLPCIRKW ARSPASAAEA  180
SDPDSSWRCP GCQSVHAVPA RELSYTCFCG RRREPPNDLF LTPHSCGEPC SKPLERADTA  240
TKGEDAGATR CPHVCVLQCH PGPCPPCKAF APDRLCPCGK QTIVRRCADR TTPVTVIGCS  300
LAGGTVVRSE ACGHLLSCGN HACQDICHPG PCGECELMPG KVTTCHCGKT GLLEKRASCL  360
DPIPTCDKVC DKKLPCGVHR CKVTCHEGDC PPCVVRVEQR CRCGSSGQMV ECYKVLEEEF  420
RCNKPCGRKK NCGRHRCSEC CCPLSKPLAQ LEGGNWDPHL CQIPCGKKLR CGQHGCQLLC  480
HSGHCPPCLE TIFNDLTCAC GRTSIPPPLP CGTPTPSCTH QCMVPQPCGH PASHQCHFGD  540
CPPCVVPVMR ECIGGHVMLR NIPCGSKDIR CNQPCGKNRQ CGIHACTRTC HPSPCDPPTA  600
NGDASSGTGG RASCGQVCGA PRRECKHTCT APCHPSSPCP DSRCEFPMTI TCSCGRITAT  660
VPCGAGGTSS GDNMFEVSII QKLPMPLQPV ESDGRRVPLG QRKLCCDEDC AKLERKKALA  720
EAFDITPPNL DALHFGENSN ASDLLSDLFR REPKWVMAIE ERCKFLVLGK TRGNSSGSLK  780
VHVFCYMMKD KRDAIRLIAD RWKLAVQGIG WDPKRFITIH VTPKSKPPAR ILGSKPGISV  840
TANHHPFFDP MVDMDPRLVV AMMDLPRDAD VSALVLRFGG ECELVWLNDK NAVAVFHDPA  900
RAATALRRLD YGSAYQGAAV FLPSSSAPPG NVWVAGQKDG VAATKNSANS WKKAAACELE  960
PSSGNWTGVV GQAPPSVWRR GGDTVAQVMG TTNRWNALES DTTTSSRPVE ESKPAPRTHA  1020
GSSSSAGPPP VSKMQPEVEV DDWEEACE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643844.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0D9WNW80.0A0A0D9WNW8_9ORYZ; Uncharacterized protein
STRINGORGLA06G0090600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1